Classification of COVID-19 Tweets

Classification is a vital work to human beings in day today life as it breaks down complex subjects. In the same way, text classification is very important to understand and realize the subject of the text. © 2021 Copyright for this paper by its authors.

Understanding the Use of e-Prints on Reddit and 4chan's Politically Incorrect Board

The dissemination and reach of scientific knowledge have increased at a blistering pace. In this context, e-Print servers have played a central role by providing scientists with a rapid and open mechanism for disseminating research without waiting for the (lengthy) peer review process. While helping the scientific community in several ways, e-Print servers also provide scientific communicators and the general public with access to a wealth of knowledge without paying hefty subscription fees. This motivates us to study how e-Prints are positioned within Web community discussions. In this paper, we analyze data from two Web communities: 14 years of Reddit data and over 4 from 4chan's Politically Incorrect board. Our findings highlight the presence of e-Prints in both science-enthusiast and general-audience communities. Real-world events and distinct factors influence the e-Prints people's discussions;e.g., there was a surge of COVID-19-related research publications during the early months of the outbreak and increased references to e-Prints in online discussions. Text in e-Prints and in online discussions referencing them has a low similarity, suggesting that the latter are not exclusively talking about the findings in the former. Further, our analysis of a sample of threads highlights: 1) misinterpretation and generalization of research findings, 2) early research findings being amplified as a source for future predictions, and 3) questioning findings from a pseudoscientific e-Print. Overall, our work emphasizes the need to quickly and effectively validate non-peer-reviewed e-Prints that get substantial press/social media coverage to help mitigate wrongful interpretations of scientific outputs. © 2023 ACM.

Emvirus: An embedding-based neural framework for human-virus protein-protein interactions prediction.

Human-virus protein-protein interactions (PPIs) play critical roles in viral infection. For example, the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) binds primarily to human angiotensin-converting enzyme 2 (ACE2) protein to infect human cells. Thus, identifying and blocking these PPIs contribute to controlling and preventing viruses. However, wet-lab experiment-based identification of human-virus PPIs is usually expensive, labor-intensive, and time-consuming, which presents the need for computational methods. Many machine-learning methods have been proposed recently and achieved good results in predicting human-virus PPIs. However, most methods are based on protein sequence features and apply manually extracted features, such as statistical characteristics, phylogenetic profiles, and physicochemical properties. In this work, we present an embedding-based neural framework with convolutional neural network (CNN) and bi-directional long short-term memory unit (Bi-LSTM) architecture, named Emvirus, to predict human-virus PPIs (including human-SARS-CoV-2 PPIs). In addition, we conduct cross-viral experiments to explore the generalization ability of Emvirus. Compared to other feature extraction methods, Emvirus achieves better prediction accuracy.

Membrane Clustering of Coronavirus Variants Using Document Similarity.

Currently, as an effect of the COVID-19 pandemic, bioinformatics, genomics, and biological computations are gaining increased attention. Genomes of viruses can be represented by character strings based on their nucleobases. Document similarity metrics can be applied to these strings to measure their similarities. Clustering algorithms can be applied to the results of their document similarities to cluster them. P systems or membrane systems are computation models inspired by the flow of information in the membrane cells. These can be used for various purposes, one of them being data clustering. This paper studies a novel and versatile clustering method for genomes and the utilization of such membrane clustering models using document similarity metrics, which is not yet a well-studied use of membrane clustering models.